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Multivalent Ligands vs Monomers
- Gonk88
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2 years 8 months ago #1
by Gonk88
Multivalent Ligands vs Monomers was created by Gonk88
I'm characterizing the interaction of a viral glycoprotein with a host protein and I got a question from my thesis committee that I dismissed initially but now I'm wondering if she might be on to something.
I've been immobilizing a biotinylated Fc fusion on a streptavidin chip and assuming that the divalency of the Fc fusion is irrelevant/negated on the surface of the chip. Is this a reasonable assumption or is this something I need to factor in to my analysis? I can honestly see it both ways:
Case 1 - The divalency of the Fc is negated because of the large number of binding sites on the surface.
Case 2 - The two binding sites of the dimer are closer together than the distance between nearest neighbor molecules on the chip so this could artificially extend dissociation if/when the analyte fell off and immediately rebound to the other binding site on the same Fc dimer.
Any thoughts on which of these interpretations is the correct one? I can honestly see it both ways. I have an experiment planned to answer the question (amine couple both Fc dimer and monomeric extracellular domain) but I'd be curious to hear what other people think.
I've been immobilizing a biotinylated Fc fusion on a streptavidin chip and assuming that the divalency of the Fc fusion is irrelevant/negated on the surface of the chip. Is this a reasonable assumption or is this something I need to factor in to my analysis? I can honestly see it both ways:
Case 1 - The divalency of the Fc is negated because of the large number of binding sites on the surface.
Case 2 - The two binding sites of the dimer are closer together than the distance between nearest neighbor molecules on the chip so this could artificially extend dissociation if/when the analyte fell off and immediately rebound to the other binding site on the same Fc dimer.
Any thoughts on which of these interpretations is the correct one? I can honestly see it both ways. I have an experiment planned to answer the question (amine couple both Fc dimer and monomeric extracellular domain) but I'd be curious to hear what other people think.
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- Arnoud
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2 years 8 months ago #2
by Arnoud
Replied by Arnoud on topic Multivalent Ligands vs Monomers
SPR theory states that when a multivalent ligand is immobilized every binding site is treated as independent. As with the amine coupling which results in a random immobilization and therefore different degrees of accessibility, when binding sites of a multivalent ligand are close together, they can have different accessibility depending on the size of the binding analyte.
Case 1 – I think this is correct.
Case 2 – is similar to a high-density sensor surface (mass transport). If you raise the dissociation flow rate and the dissociation stays the same, there is no rebinding.
I am really interested in the outcome of your experiment.
Kind regards
Arnoud
Case 1 – I think this is correct.
Case 2 – is similar to a high-density sensor surface (mass transport). If you raise the dissociation flow rate and the dissociation stays the same, there is no rebinding.
I am really interested in the outcome of your experiment.
Kind regards
Arnoud
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