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DNA polymerase - SPR
- mtarca
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6 years 2 months ago #1
by mtarca
DNA polymerase - SPR was created by mtarca
Hello. Has anyone done any SPR on DNA polymerase? Bind the polymerase on a surface and pass on nucleotide over it. Not sure where to begin. What surface to use, buffer condition, method, etc. Any info would help (experience running it or journals). Thanks!
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- Arnoud
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6 years 1 month ago #2
by Arnoud
Replied by Arnoud on topic DNA polymerase - SPR
Hi,
I have rather a long list of publications of all sorts of DNA manipulations.
1. Ciolkowski, M. L., Fang, M. M. and Lund, M. E.; A surface plasmon resonance method for detecting multiple modes of DNA-ligand interactions. J.Pharm.Biomed.Anal. (22) 6: 1037-1045; 2000.
2. Gambari, R., Feriotto, G., Rutigliano, C., et al.; Biospecific interaction analysis (BIA) of low-molecular weight DNA-binding drugs. J.Pharmacol.Exp.Ther. (294) 1: 370-377; 2000.
3. Gotoh, M., Hasebe, M., Ohira, T., et al.; Rapid method for detection of point mutations using mismatch binding protein (MutS) and an optical biosensor. Genet.Anal. (14) 2: 47-50; 1997.
4. Greagg, M. A., Fogg, M. J., Panayotou, G., et al.; A read-ahead function in archaeal DNA polymerases detects promutagenic template-strand uracil. Proc.Natl.Acad.Sci.U.S.A (96) 16: 9045-9050; 1999.
5. Maesawa, C., Inaba, T., Sato, H., et al.; A rapid biosensor chip assay for measuring of telomerase activity using surface plasmon resonance. Nucleic Acids Res. (31) 2: E4-E4; 2003.
6. Nilsson, P., Persson, B., Uhlen, M., et al.; Real-time monitoring of DNA manipulations using biosensor technology. Analytical Biochemistry (224) 1: 400-408; 1995.
7. Oda, M., Furukawa, K., Sarai, A., et al.; Kinetic analysis of DNA binding by the c-Myb DNA-binding domain using surface plasmon resonance. FEBS Letters (454) 3: 288-292; 1999.
8. Palau, W. and Di Primo, C.; Single-cycle kinetic analysis of ternary DNA complexes by surface plasmon resonance on a decaying surface. Biochimie (94) 9: 1891-1899; 2012.
9. Sando, S., Saito, I. and Nakatani, K.; Scanning of guanine-guanine mismatches in DNA by synthetic ligands using surface plasmon resonance. Nat.Biotechnol. (19) 1: 51-55; 2001.
10. Taira, S. and Yokoyama, K.; DNA-conjugated polymers for self-assembled DNA chip fabrication. Anal.Sci. (20) 2: 267-271; 2004.
11. Tsoi, P. Y. and Yang, M.; Kinetic study of various binding modes between human DNA polymerase beta and different DNA substrates by surface-plasmon-resonance biosensor. Biochem.J. (361) Pt 2: 317-325; 2002.
12. Vikholm-Lundin, I., Piskonen, R. and Albers, W. M.; Hybridisation of surface-immobilised single-stranded oligonucleotides and polymer monitored by surface plasmon resonance. Biosens.Bioelectron. (.) 2006.
13. Wang, R., Tombelli, S., Minunni, M., et al.; Immobilisation of DNA probes for the development of SPR-based sensing. Biosens.Bioelectron. (20) 5: 967-974; 2004.
14. Yu, F., Yao, D. and Knoll, W.; Oligonucleotide hybridization studied by a surface plasmon diffraction sensor (SPDS). Nucleic Acids Res. (32) 9: e75; 2004.
Kind regards
Arnoud
I have rather a long list of publications of all sorts of DNA manipulations.
1. Ciolkowski, M. L., Fang, M. M. and Lund, M. E.; A surface plasmon resonance method for detecting multiple modes of DNA-ligand interactions. J.Pharm.Biomed.Anal. (22) 6: 1037-1045; 2000.
2. Gambari, R., Feriotto, G., Rutigliano, C., et al.; Biospecific interaction analysis (BIA) of low-molecular weight DNA-binding drugs. J.Pharmacol.Exp.Ther. (294) 1: 370-377; 2000.
3. Gotoh, M., Hasebe, M., Ohira, T., et al.; Rapid method for detection of point mutations using mismatch binding protein (MutS) and an optical biosensor. Genet.Anal. (14) 2: 47-50; 1997.
4. Greagg, M. A., Fogg, M. J., Panayotou, G., et al.; A read-ahead function in archaeal DNA polymerases detects promutagenic template-strand uracil. Proc.Natl.Acad.Sci.U.S.A (96) 16: 9045-9050; 1999.
5. Maesawa, C., Inaba, T., Sato, H., et al.; A rapid biosensor chip assay for measuring of telomerase activity using surface plasmon resonance. Nucleic Acids Res. (31) 2: E4-E4; 2003.
6. Nilsson, P., Persson, B., Uhlen, M., et al.; Real-time monitoring of DNA manipulations using biosensor technology. Analytical Biochemistry (224) 1: 400-408; 1995.
7. Oda, M., Furukawa, K., Sarai, A., et al.; Kinetic analysis of DNA binding by the c-Myb DNA-binding domain using surface plasmon resonance. FEBS Letters (454) 3: 288-292; 1999.
8. Palau, W. and Di Primo, C.; Single-cycle kinetic analysis of ternary DNA complexes by surface plasmon resonance on a decaying surface. Biochimie (94) 9: 1891-1899; 2012.
9. Sando, S., Saito, I. and Nakatani, K.; Scanning of guanine-guanine mismatches in DNA by synthetic ligands using surface plasmon resonance. Nat.Biotechnol. (19) 1: 51-55; 2001.
10. Taira, S. and Yokoyama, K.; DNA-conjugated polymers for self-assembled DNA chip fabrication. Anal.Sci. (20) 2: 267-271; 2004.
11. Tsoi, P. Y. and Yang, M.; Kinetic study of various binding modes between human DNA polymerase beta and different DNA substrates by surface-plasmon-resonance biosensor. Biochem.J. (361) Pt 2: 317-325; 2002.
12. Vikholm-Lundin, I., Piskonen, R. and Albers, W. M.; Hybridisation of surface-immobilised single-stranded oligonucleotides and polymer monitored by surface plasmon resonance. Biosens.Bioelectron. (.) 2006.
13. Wang, R., Tombelli, S., Minunni, M., et al.; Immobilisation of DNA probes for the development of SPR-based sensing. Biosens.Bioelectron. (20) 5: 967-974; 2004.
14. Yu, F., Yao, D. and Knoll, W.; Oligonucleotide hybridization studied by a surface plasmon diffraction sensor (SPDS). Nucleic Acids Res. (32) 9: e75; 2004.
Kind regards
Arnoud
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