Dear Arnould
will the kinetic constants ka, kd change if the antibody (150 KDa; higher mol wt) is used as analyte and protein X (40 KDa; low mol wt) is used as a ligand in biacore.
Will the result be same as immobilizing antibody and running protein X as analyte (which is usually the case)???
In principle the kinetic constants should not change if the role (ligand or analyte) of the interactants is changed.
That said, antibodies have two binding sites. Using the antibody as ligand the two binding sites are treated as independent binding sites (1:1 model). However, when the antibody is used as analyte the two binding sites are not independent anymore and this will give a bivalent analyte model.