Hope you can help!
BIAcore 3000, CM5 chip, amine-coupled streptavidin, biotinylated ligands.
FC1 7310 strep + 140 control protein (45kDa)
FC2 6753 strep + 302 ligand protein (75kDa)
100 ul/min, KINJECT 25ul, 90s dissociation
single flow cell injections at maximal data rate (10Hz)
Injection at 0.3x, 1x, 3x KD (100nM from equilibrium binding experiments)
*We suspect the analyte may be a non-covalent dimer*
1) sticking to flow cells? aggregated protein? (fresh off the SEC S200 column though!)
2) why is my control cell giving a higher signal in the dissociation phase? can I set this as zero to calculate the Kd?
3) two-phase dissociation (evidence of 2:1 stoichiometry, maybe?)
In short, is there useable data here?
Any help would be greatly appreciated!
Lee