Hi,
I don't have experience with phage screening but have some general information about regeneration.
The regeneration pulse should be short. I have pulses of 10 - 20 seconds max. If this is not working you should look for another solution. Read:
www.sprpages.nl/kinetics/regeneration.html
and check the references for more idea's.
I'am not sure what you mean with long dissociation times. If your system is fully dissociated in 10 minutes, then don't bother with regeneration. For tight binders (low kd value) it can take a lot more time to dissociate fully. Then regeneration is an option.
Arnoud